Small RNA sequencing for secondary metabolite analysis in Persicaria minor

Abdul Fatah A. Samad, Nazaruddin Nazaruddin, Muhammad Sajad, Jaeyres Jani, Abdul Munir Abd. Murad, Zamri Zainal, Ismanizan Ismail

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of many valuable biomolecules which have well-established role in agriculture and pharmaceutical industry. In P. minor, for the first time, we have generated small RNAs data sets, which can be used as tool in deciphering their roles in terpenoid biosynthesis pathways. Fungal pathogen, Fusarium oxysporum was used as elicitor to trigger SMs biosynthesis in P. minor. Raw reads and small RNA analysis data have already been deposited at GenBank under the accessions; SRX2645684 (Fusarium-treated), SRX2645685 (Fusarium-treated), SRX2645686 (mock-infected), and SRX2645687 (mock-infected).

Original languageEnglish
Pages (from-to)3-4
Number of pages2
JournalGenomics Data
Volume13
DOIs
Publication statusPublished - 1 Sep 2017

Fingerprint

RNA Sequence Analysis
Terpenes
Fusarium
Metabolites
Biosynthesis
RNA
Indonesia
Vietnam
Malaysia
Nucleic Acid Databases
Drug Industry
Biomolecules
Pathogens
Thailand
Medicinal Plants
Agriculture
Pharmaceutical Preparations
Industry

Keywords

  • Fusarium oxysporum
  • Persicaria minor
  • Secondary metabolite
  • Small RNA sequencing

ASJC Scopus subject areas

  • Biotechnology
  • Biochemistry
  • Molecular Medicine
  • Genetics

Cite this

Small RNA sequencing for secondary metabolite analysis in Persicaria minor. / Samad, Abdul Fatah A.; Nazaruddin, Nazaruddin; Sajad, Muhammad; Jani, Jaeyres; Abd. Murad, Abdul Munir; Zainal, Zamri; Ismail, Ismanizan.

In: Genomics Data, Vol. 13, 01.09.2017, p. 3-4.

Research output: Contribution to journalArticle

Samad, Abdul Fatah A. ; Nazaruddin, Nazaruddin ; Sajad, Muhammad ; Jani, Jaeyres ; Abd. Murad, Abdul Munir ; Zainal, Zamri ; Ismail, Ismanizan. / Small RNA sequencing for secondary metabolite analysis in Persicaria minor. In: Genomics Data. 2017 ; Vol. 13. pp. 3-4.
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