RNA-seq analysis of mangosteen (Garcinia mangostana L.) fruit ripening

Azhani Abdul-Rahman, Hoe Han Goh, Kok Keong Loke, Normah Mohd. Noor, Wan Mohd Aizat Wan Kamaruddin

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

Mangosteen (Garcinia mangostana L.) is known for its delectable taste and contains high amount of xanthones which have been reported to possess anti-cancer, anti-inflammatory and other bioactive properties. However, stage-specific regulation of mangosteen fruit ripening has never been studied in detail. We have performed a comparative transcriptomic analysis of three ripening stages (Stage 0, 2 and 6) of mangosteen. We have obtained a raw data from six libraries through Illumina HiSeq 4000. A total of ~ 40 Gb of raw data were generated. Clean reads of 650,887,650 (bp) were obtained from 656,913,570 (bp) raw reads. The raw transcriptome data were deposited to SRA database, with the BioProject accession number of PRJNA339916. These data will be beneficial for transcriptome profiling in order to study the regulation of mangosteen fruit ripening. The lack of a complete sequence database from this species impedes protein identification. These data sets provide a reference data for the exploration of novel genes or proteins to understand mangosteen fruit ripening behaviour.

Original languageEnglish
Pages (from-to)159-160
Number of pages2
JournalGenomics Data
Volume12
DOIs
Publication statusPublished - 1 Jun 2017

Fingerprint

Garcinia mangostana
Garcinia
Fruits
Fruit
RNA
Xanthones
Proteins
Anti-Inflammatory Agents
Genes
Databases
Gene Expression Profiling
Transcriptome
Libraries

Keywords

  • Fruit ripening
  • Garcinia mangostana L.
  • Illumina sequencing
  • Transcriptome

ASJC Scopus subject areas

  • Biotechnology
  • Biochemistry
  • Molecular Medicine
  • Genetics

Cite this

RNA-seq analysis of mangosteen (Garcinia mangostana L.) fruit ripening. / Abdul-Rahman, Azhani; Goh, Hoe Han; Loke, Kok Keong; Mohd. Noor, Normah; Wan Kamaruddin, Wan Mohd Aizat.

In: Genomics Data, Vol. 12, 01.06.2017, p. 159-160.

Research output: Contribution to journalArticle

Abdul-Rahman, Azhani ; Goh, Hoe Han ; Loke, Kok Keong ; Mohd. Noor, Normah ; Wan Kamaruddin, Wan Mohd Aizat. / RNA-seq analysis of mangosteen (Garcinia mangostana L.) fruit ripening. In: Genomics Data. 2017 ; Vol. 12. pp. 159-160.
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