RNA-seq analysis for secondary metabolite pathway gene discovery in Polygonum minus

Kok Keong Loke, Reyhaneh Rahnamaie-Tajadod, Chean Chean Yeoh, Hoe Han Goh, Zeti Azura Mohamed Hussein, Normah Mohd. Noor, Zamri Zainal, Ismanizan Ismail

Research output: Contribution to journalArticle

13 Citations (Scopus)

Abstract

Polygonum minus plant is rich in secondary metabolites, especially terpenoids and flavonoids. Present study generates transcriptome resource for P. minus to decipher its secondary metabolite biosynthesis pathways. Raw reads and the transcriptome assembly project have been deposited at GenBank under the accessions SRX313492 (root) and SRX669305 (leaf) respectively.

Original languageEnglish
Pages (from-to)12-13
Number of pages2
JournalGenomics Data
Volume7
DOIs
Publication statusPublished - 1 Mar 2016

Fingerprint

Polygonum
Genetic Association Studies
Metabolites
Transcriptome
Genes
RNA
Biosynthesis
Terpenes
Nucleic Acid Databases
Flavonoids

Keywords

  • Hybrid assembly
  • Kesum
  • Secondary metabolites
  • Transcriptome

ASJC Scopus subject areas

  • Molecular Medicine
  • Biochemistry
  • Biotechnology
  • Genetics

Cite this

RNA-seq analysis for secondary metabolite pathway gene discovery in Polygonum minus. / Loke, Kok Keong; Rahnamaie-Tajadod, Reyhaneh; Yeoh, Chean Chean; Goh, Hoe Han; Mohamed Hussein, Zeti Azura; Mohd. Noor, Normah; Zainal, Zamri; Ismail, Ismanizan.

In: Genomics Data, Vol. 7, 01.03.2016, p. 12-13.

Research output: Contribution to journalArticle

@article{8cfe076cb9174318aaefef1ba85e687e,
title = "RNA-seq analysis for secondary metabolite pathway gene discovery in Polygonum minus",
abstract = "Polygonum minus plant is rich in secondary metabolites, especially terpenoids and flavonoids. Present study generates transcriptome resource for P. minus to decipher its secondary metabolite biosynthesis pathways. Raw reads and the transcriptome assembly project have been deposited at GenBank under the accessions SRX313492 (root) and SRX669305 (leaf) respectively.",
keywords = "Hybrid assembly, Kesum, Secondary metabolites, Transcriptome",
author = "Loke, {Kok Keong} and Reyhaneh Rahnamaie-Tajadod and Yeoh, {Chean Chean} and Goh, {Hoe Han} and {Mohamed Hussein}, {Zeti Azura} and {Mohd. Noor}, Normah and Zamri Zainal and Ismanizan Ismail",
year = "2016",
month = "3",
day = "1",
doi = "10.1016/j.gdata.2015.11.003",
language = "English",
volume = "7",
pages = "12--13",
journal = "Genomics Data",
issn = "2213-5960",
publisher = "Elsevier Inc.",

}

TY - JOUR

T1 - RNA-seq analysis for secondary metabolite pathway gene discovery in Polygonum minus

AU - Loke, Kok Keong

AU - Rahnamaie-Tajadod, Reyhaneh

AU - Yeoh, Chean Chean

AU - Goh, Hoe Han

AU - Mohamed Hussein, Zeti Azura

AU - Mohd. Noor, Normah

AU - Zainal, Zamri

AU - Ismail, Ismanizan

PY - 2016/3/1

Y1 - 2016/3/1

N2 - Polygonum minus plant is rich in secondary metabolites, especially terpenoids and flavonoids. Present study generates transcriptome resource for P. minus to decipher its secondary metabolite biosynthesis pathways. Raw reads and the transcriptome assembly project have been deposited at GenBank under the accessions SRX313492 (root) and SRX669305 (leaf) respectively.

AB - Polygonum minus plant is rich in secondary metabolites, especially terpenoids and flavonoids. Present study generates transcriptome resource for P. minus to decipher its secondary metabolite biosynthesis pathways. Raw reads and the transcriptome assembly project have been deposited at GenBank under the accessions SRX313492 (root) and SRX669305 (leaf) respectively.

KW - Hybrid assembly

KW - Kesum

KW - Secondary metabolites

KW - Transcriptome

UR - http://www.scopus.com/inward/record.url?scp=84946925636&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84946925636&partnerID=8YFLogxK

U2 - 10.1016/j.gdata.2015.11.003

DO - 10.1016/j.gdata.2015.11.003

M3 - Article

VL - 7

SP - 12

EP - 13

JO - Genomics Data

JF - Genomics Data

SN - 2213-5960

ER -