Phylogenetic relationships of malaysia's pig-tailed macaque macaca nemestrina based on D-loop region sequences

M. A.B. Abdul-Latiff, A. Ampeng, Salmah Yaakop, Badrul Munir Md. Zain

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Abstract

Phylogenetic relationships among Malaysian pig-tailed macaques have never been established even though the data are crucial in aiding conservation plan for the species. The aims of this study is to establish the phylogenetic relationships of Macaca nemestrina in Malaysia. A total of 21 genetic samples of M. nemestrina yielding 458 bp of Dloop sequences were used in phylogenetic analyses, in addition to one sample of M. fascicularis which was used as an outgroup. Sequence character analysis revealed that D-loop locus contains 23% parsimony informative character detected among the ingroups. Further analysis indicated a clear separation between populations originating from different regions; the Malay Peninsula populations are separated from Borneo Insular population; and Perak population formed a distinctive clade within Peninsular Malaysia populations. Phylogenetic trees (NJ, MP and Bayesian) portray a consistent clustering paradigm as Borneo population was distinguished from Peninsula population (100% bootstrap value in theNJ, MP, 1.00 posterior probability in Bayesian trees). Perak's population was separated from other Peninsula populations (100% in NJ, 99% in MP and1.00 in Bayesian). D-loop region of mtDNA is proven to be a suitable locus in studying the separation of M. nemestrina at population level. These findings are crucial in aiding the conservation management and translocation process of M. fascicularis populations in Malaysia.

Original languageEnglish
Title of host publication2014 UKM FST Postgraduate Colloquium - Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2014 Postgraduate Colloquium
PublisherAmerican Institute of Physics Inc.
Pages772-776
Number of pages5
Volume1614
ISBN (Electronic)9780735412507
DOIs
Publication statusPublished - 2014
Event2014 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2014 - Selangor, Malaysia
Duration: 9 Apr 201411 Apr 2014

Other

Other2014 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2014
CountryMalaysia
CitySelangor
Period9/4/1411/4/14

Fingerprint

Malaysia
swine
peninsulas
loci
conservation

Keywords

  • D-loop
  • Macaca nemestrina
  • MtDNA
  • Phylogenetic relationships
  • Pig-tailed macaque

ASJC Scopus subject areas

  • Physics and Astronomy(all)

Cite this

Abdul-Latiff, M. A. B., Ampeng, A., Yaakop, S., & Md. Zain, B. M. (2014). Phylogenetic relationships of malaysia's pig-tailed macaque macaca nemestrina based on D-loop region sequences. In 2014 UKM FST Postgraduate Colloquium - Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2014 Postgraduate Colloquium (Vol. 1614, pp. 772-776). American Institute of Physics Inc.. https://doi.org/10.1063/1.4895300

Phylogenetic relationships of malaysia's pig-tailed macaque macaca nemestrina based on D-loop region sequences. / Abdul-Latiff, M. A.B.; Ampeng, A.; Yaakop, Salmah; Md. Zain, Badrul Munir.

2014 UKM FST Postgraduate Colloquium - Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2014 Postgraduate Colloquium. Vol. 1614 American Institute of Physics Inc., 2014. p. 772-776.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abdul-Latiff, MAB, Ampeng, A, Yaakop, S & Md. Zain, BM 2014, Phylogenetic relationships of malaysia's pig-tailed macaque macaca nemestrina based on D-loop region sequences. in 2014 UKM FST Postgraduate Colloquium - Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2014 Postgraduate Colloquium. vol. 1614, American Institute of Physics Inc., pp. 772-776, 2014 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2014, Selangor, Malaysia, 9/4/14. https://doi.org/10.1063/1.4895300
Abdul-Latiff MAB, Ampeng A, Yaakop S, Md. Zain BM. Phylogenetic relationships of malaysia's pig-tailed macaque macaca nemestrina based on D-loop region sequences. In 2014 UKM FST Postgraduate Colloquium - Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2014 Postgraduate Colloquium. Vol. 1614. American Institute of Physics Inc. 2014. p. 772-776 https://doi.org/10.1063/1.4895300
Abdul-Latiff, M. A.B. ; Ampeng, A. ; Yaakop, Salmah ; Md. Zain, Badrul Munir. / Phylogenetic relationships of malaysia's pig-tailed macaque macaca nemestrina based on D-loop region sequences. 2014 UKM FST Postgraduate Colloquium - Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2014 Postgraduate Colloquium. Vol. 1614 American Institute of Physics Inc., 2014. pp. 772-776
@inproceedings{94460173e10b4b0f8a26c581df0742a1,
title = "Phylogenetic relationships of malaysia's pig-tailed macaque macaca nemestrina based on D-loop region sequences",
abstract = "Phylogenetic relationships among Malaysian pig-tailed macaques have never been established even though the data are crucial in aiding conservation plan for the species. The aims of this study is to establish the phylogenetic relationships of Macaca nemestrina in Malaysia. A total of 21 genetic samples of M. nemestrina yielding 458 bp of Dloop sequences were used in phylogenetic analyses, in addition to one sample of M. fascicularis which was used as an outgroup. Sequence character analysis revealed that D-loop locus contains 23{\%} parsimony informative character detected among the ingroups. Further analysis indicated a clear separation between populations originating from different regions; the Malay Peninsula populations are separated from Borneo Insular population; and Perak population formed a distinctive clade within Peninsular Malaysia populations. Phylogenetic trees (NJ, MP and Bayesian) portray a consistent clustering paradigm as Borneo population was distinguished from Peninsula population (100{\%} bootstrap value in theNJ, MP, 1.00 posterior probability in Bayesian trees). Perak's population was separated from other Peninsula populations (100{\%} in NJ, 99{\%} in MP and1.00 in Bayesian). D-loop region of mtDNA is proven to be a suitable locus in studying the separation of M. nemestrina at population level. These findings are crucial in aiding the conservation management and translocation process of M. fascicularis populations in Malaysia.",
keywords = "D-loop, Macaca nemestrina, MtDNA, Phylogenetic relationships, Pig-tailed macaque",
author = "Abdul-Latiff, {M. A.B.} and A. Ampeng and Salmah Yaakop and {Md. Zain}, {Badrul Munir}",
year = "2014",
doi = "10.1063/1.4895300",
language = "English",
volume = "1614",
pages = "772--776",
booktitle = "2014 UKM FST Postgraduate Colloquium - Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2014 Postgraduate Colloquium",
publisher = "American Institute of Physics Inc.",

}

TY - GEN

T1 - Phylogenetic relationships of malaysia's pig-tailed macaque macaca nemestrina based on D-loop region sequences

AU - Abdul-Latiff, M. A.B.

AU - Ampeng, A.

AU - Yaakop, Salmah

AU - Md. Zain, Badrul Munir

PY - 2014

Y1 - 2014

N2 - Phylogenetic relationships among Malaysian pig-tailed macaques have never been established even though the data are crucial in aiding conservation plan for the species. The aims of this study is to establish the phylogenetic relationships of Macaca nemestrina in Malaysia. A total of 21 genetic samples of M. nemestrina yielding 458 bp of Dloop sequences were used in phylogenetic analyses, in addition to one sample of M. fascicularis which was used as an outgroup. Sequence character analysis revealed that D-loop locus contains 23% parsimony informative character detected among the ingroups. Further analysis indicated a clear separation between populations originating from different regions; the Malay Peninsula populations are separated from Borneo Insular population; and Perak population formed a distinctive clade within Peninsular Malaysia populations. Phylogenetic trees (NJ, MP and Bayesian) portray a consistent clustering paradigm as Borneo population was distinguished from Peninsula population (100% bootstrap value in theNJ, MP, 1.00 posterior probability in Bayesian trees). Perak's population was separated from other Peninsula populations (100% in NJ, 99% in MP and1.00 in Bayesian). D-loop region of mtDNA is proven to be a suitable locus in studying the separation of M. nemestrina at population level. These findings are crucial in aiding the conservation management and translocation process of M. fascicularis populations in Malaysia.

AB - Phylogenetic relationships among Malaysian pig-tailed macaques have never been established even though the data are crucial in aiding conservation plan for the species. The aims of this study is to establish the phylogenetic relationships of Macaca nemestrina in Malaysia. A total of 21 genetic samples of M. nemestrina yielding 458 bp of Dloop sequences were used in phylogenetic analyses, in addition to one sample of M. fascicularis which was used as an outgroup. Sequence character analysis revealed that D-loop locus contains 23% parsimony informative character detected among the ingroups. Further analysis indicated a clear separation between populations originating from different regions; the Malay Peninsula populations are separated from Borneo Insular population; and Perak population formed a distinctive clade within Peninsular Malaysia populations. Phylogenetic trees (NJ, MP and Bayesian) portray a consistent clustering paradigm as Borneo population was distinguished from Peninsula population (100% bootstrap value in theNJ, MP, 1.00 posterior probability in Bayesian trees). Perak's population was separated from other Peninsula populations (100% in NJ, 99% in MP and1.00 in Bayesian). D-loop region of mtDNA is proven to be a suitable locus in studying the separation of M. nemestrina at population level. These findings are crucial in aiding the conservation management and translocation process of M. fascicularis populations in Malaysia.

KW - D-loop

KW - Macaca nemestrina

KW - MtDNA

KW - Phylogenetic relationships

KW - Pig-tailed macaque

UR - http://www.scopus.com/inward/record.url?scp=85030983876&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=85030983876&partnerID=8YFLogxK

U2 - 10.1063/1.4895300

DO - 10.1063/1.4895300

M3 - Conference contribution

AN - SCOPUS:85030983876

VL - 1614

SP - 772

EP - 776

BT - 2014 UKM FST Postgraduate Colloquium - Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2014 Postgraduate Colloquium

PB - American Institute of Physics Inc.

ER -