Identification of small open reading frames in the Glaciozyma antarctica genome

Shuhaila Mat-Sharani, Izwan Bharudin, Nursyafiqi Zainuddin, Abdul Munir Abd. Murad, Farah Diba Abu Bakar, Nazalan Najimuddin, Nor Muhammad Mahadi, Mohd Firdaus Mohd Raih

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Glaciozyma antarctica is an obligate psychrophilic yeast that was isolated from Casey Research Station, Antarctica. The objective of this study was to identify small Open Reading Frames (sORFs) in the G. antarctica genome. Small ORFs have been found in other organisms including Saccharomyces cerevisiae and human and they have been known to partake in a diverse variety of functions. In this study, ORFs were searched from the existing G. antarctica genome annotations and this resulted 294 sORFs (of at most 100 amino acids) which represented 4% of the 7857 annotated ORFs. Several of these sORFs were validated by mapping to EST and transcriptome of G. antarctica.

Original languageEnglish
Title of host publication2015 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2015 Postgraduate Colloquium
PublisherAmerican Institute of Physics Inc.
Volume1678
ISBN (Electronic)9780735413252
DOIs
Publication statusPublished - 25 Sep 2015
Event2015 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2015 - Selangor, Malaysia
Duration: 15 Apr 201516 Apr 2015

Other

Other2015 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2015
CountryMalaysia
CitySelangor
Period15/4/1516/4/15

Fingerprint

genome
Antarctic regions
annotations
saccharomyces
yeast
organisms
amino acids
stations

ASJC Scopus subject areas

  • Physics and Astronomy(all)

Cite this

Mat-Sharani, S., Bharudin, I., Zainuddin, N., Abd. Murad, A. M., Abu Bakar, F. D., Najimuddin, N., ... Mohd Raih, M. F. (2015). Identification of small open reading frames in the Glaciozyma antarctica genome. In 2015 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2015 Postgraduate Colloquium (Vol. 1678). [030016] American Institute of Physics Inc.. https://doi.org/10.1063/1.4931237

Identification of small open reading frames in the Glaciozyma antarctica genome. / Mat-Sharani, Shuhaila; Bharudin, Izwan; Zainuddin, Nursyafiqi; Abd. Murad, Abdul Munir; Abu Bakar, Farah Diba; Najimuddin, Nazalan; Mahadi, Nor Muhammad; Mohd Raih, Mohd Firdaus.

2015 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2015 Postgraduate Colloquium. Vol. 1678 American Institute of Physics Inc., 2015. 030016.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mat-Sharani, S, Bharudin, I, Zainuddin, N, Abd. Murad, AM, Abu Bakar, FD, Najimuddin, N, Mahadi, NM & Mohd Raih, MF 2015, Identification of small open reading frames in the Glaciozyma antarctica genome. in 2015 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2015 Postgraduate Colloquium. vol. 1678, 030016, American Institute of Physics Inc., 2015 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2015, Selangor, Malaysia, 15/4/15. https://doi.org/10.1063/1.4931237
Mat-Sharani S, Bharudin I, Zainuddin N, Abd. Murad AM, Abu Bakar FD, Najimuddin N et al. Identification of small open reading frames in the Glaciozyma antarctica genome. In 2015 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2015 Postgraduate Colloquium. Vol. 1678. American Institute of Physics Inc. 2015. 030016 https://doi.org/10.1063/1.4931237
Mat-Sharani, Shuhaila ; Bharudin, Izwan ; Zainuddin, Nursyafiqi ; Abd. Murad, Abdul Munir ; Abu Bakar, Farah Diba ; Najimuddin, Nazalan ; Mahadi, Nor Muhammad ; Mohd Raih, Mohd Firdaus. / Identification of small open reading frames in the Glaciozyma antarctica genome. 2015 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2015 Postgraduate Colloquium. Vol. 1678 American Institute of Physics Inc., 2015.
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