Abstract
Glaciozyma antarctica is an obligate psychrophilic yeast that was isolated from Casey Research Station, Antarctica. The objective of this study was to identify small Open Reading Frames (sORFs) in the G. antarctica genome. Small ORFs have been found in other organisms including Saccharomyces cerevisiae and human and they have been known to partake in a diverse variety of functions. In this study, ORFs were searched from the existing G. antarctica genome annotations and this resulted 294 sORFs (of at most 100 amino acids) which represented 4% of the 7857 annotated ORFs. Several of these sORFs were validated by mapping to EST and transcriptome of G. antarctica.
| Original language | English |
|---|---|
| Title of host publication | 2015 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2015 Postgraduate Colloquium |
| Publisher | American Institute of Physics Inc. |
| Volume | 1678 |
| ISBN (Electronic) | 9780735413252 |
| DOIs | |
| Publication status | Published - 25 Sep 2015 |
| Event | 2015 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2015 - Selangor, Malaysia Duration: 15 Apr 2015 → 16 Apr 2015 |
Other
| Other | 2015 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2015 |
|---|---|
| Country | Malaysia |
| City | Selangor |
| Period | 15/4/15 → 16/4/15 |
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ASJC Scopus subject areas
- Physics and Astronomy(all)
Cite this
Identification of small open reading frames in the Glaciozyma antarctica genome. / Mat-Sharani, Shuhaila; Bharudin, Izwan; Zainuddin, Nursyafiqi; Abd. Murad, Abdul Munir; Abu Bakar, Farah Diba; Najimuddin, Nazalan; Mahadi, Nor Muhammad; Mohd Raih, Mohd Firdaus.
2015 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2015 Postgraduate Colloquium. Vol. 1678 American Institute of Physics Inc., 2015. 030016.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
}
TY - GEN
T1 - Identification of small open reading frames in the Glaciozyma antarctica genome
AU - Mat-Sharani, Shuhaila
AU - Bharudin, Izwan
AU - Zainuddin, Nursyafiqi
AU - Abd. Murad, Abdul Munir
AU - Abu Bakar, Farah Diba
AU - Najimuddin, Nazalan
AU - Mahadi, Nor Muhammad
AU - Mohd Raih, Mohd Firdaus
PY - 2015/9/25
Y1 - 2015/9/25
N2 - Glaciozyma antarctica is an obligate psychrophilic yeast that was isolated from Casey Research Station, Antarctica. The objective of this study was to identify small Open Reading Frames (sORFs) in the G. antarctica genome. Small ORFs have been found in other organisms including Saccharomyces cerevisiae and human and they have been known to partake in a diverse variety of functions. In this study, ORFs were searched from the existing G. antarctica genome annotations and this resulted 294 sORFs (of at most 100 amino acids) which represented 4% of the 7857 annotated ORFs. Several of these sORFs were validated by mapping to EST and transcriptome of G. antarctica.
AB - Glaciozyma antarctica is an obligate psychrophilic yeast that was isolated from Casey Research Station, Antarctica. The objective of this study was to identify small Open Reading Frames (sORFs) in the G. antarctica genome. Small ORFs have been found in other organisms including Saccharomyces cerevisiae and human and they have been known to partake in a diverse variety of functions. In this study, ORFs were searched from the existing G. antarctica genome annotations and this resulted 294 sORFs (of at most 100 amino acids) which represented 4% of the 7857 annotated ORFs. Several of these sORFs were validated by mapping to EST and transcriptome of G. antarctica.
UR - http://www.scopus.com/inward/record.url?scp=85006223082&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85006223082&partnerID=8YFLogxK
U2 - 10.1063/1.4931237
DO - 10.1063/1.4931237
M3 - Conference contribution
VL - 1678
BT - 2015 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2015 Postgraduate Colloquium
PB - American Institute of Physics Inc.
ER -