Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment

Wan Mohd Aizat Wan Kamaruddin, Sarah Ibrahim, Reyhaneh Rahnamaie-Tajadod, Kok Keong Loke, Hoe Han Goh, Normah Mohd. Noor

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

Proteomics is often hindered by the lack of protein sequence database particularly for non-model species such as Persicaria minor herbs. An integrative approach called proteomics informed by transcriptomics is possible [1], in which translated transcriptome sequence database is used as the protein sequence database. In this current study, the proteome profile were profiled using SWATH-MS technology complemented with documented transcriptome profiling [2], the first such report in this tropical herb. The plant was also elicited using a phytohormone, methyl jasmonate (MeJA) and protein changes were elucidated using label-free quantification of SWATH-MS to understand the role of such signal molecule in this herbal species. The mass spectrometry proteomics data was deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD005749. This data article refers to the article entitled “Proteomics (SWATH-MS)-informed by transcriptomics approach of Persicaria minor leaves upon methyl jasmonate elicitation” [3].

Original languageEnglish
Pages (from-to)1091-1094
Number of pages4
JournalData in Brief
Volume16
DOIs
Publication statusPublished - 1 Feb 2018

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Mass spectrometry
Proteins
Plant Growth Regulators
Proteome
Labels
Molecules
methyl jasmonate
Proteomics

ASJC Scopus subject areas

  • General

Cite this

Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment. / Wan Kamaruddin, Wan Mohd Aizat; Ibrahim, Sarah; Rahnamaie-Tajadod, Reyhaneh; Loke, Kok Keong; Goh, Hoe Han; Mohd. Noor, Normah.

In: Data in Brief, Vol. 16, 01.02.2018, p. 1091-1094.

Research output: Contribution to journalArticle

Wan Kamaruddin, Wan Mohd Aizat ; Ibrahim, Sarah ; Rahnamaie-Tajadod, Reyhaneh ; Loke, Kok Keong ; Goh, Hoe Han ; Mohd. Noor, Normah. / Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment. In: Data in Brief. 2018 ; Vol. 16. pp. 1091-1094.
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