Draft genome sequence of Mameliella alba strain UMTAT08 isolated from clonal culture of toxic dinoflagellate Alexandrium tamiyavanichii

Muhd Danish-Daniel, Gan Han Ming, Mohd Ezhar Mohd Noor, Yik Sung Yeong, Gires Usup

Research output: Contribution to journalArticle

Abstract

Mameliella alba strain UMTAT08 was isolated from clonal culture of paralytic shellfish toxin producing dinoflagellate, Alexandrium tamiyavanichii. Genome of the strain UMTAT08 was sequenced in order to gain insights into the dinoflagellate-bacteria interactions. The draft genome sequence of strain UMTAT08 contains 5.84Mbp with an estimated G + C content of 65%, 5717 open reading frames, 5 rRNAs and 49 tRNAs. It contains genes related to nutrients uptake, quorum sensing and environmental tolerance related genes. Gene clusters for the biosynthesis of type 1 polyketide synthase, bacteriocin, microcin, terpene and ectoine were also identified. This is suggesting that the bacterium possesses diverse adaptation strategy to survive within the dinoflagellate phycosphere. The draft genome sequence and annotation have been deposited at DDBJ/EMBL/GenBank under the accession number JSUQ00000000.

Original languageEnglish
Pages (from-to)12-14
Number of pages3
JournalGenomics Data
Volume10
DOIs
Publication statusPublished - 1 Dec 2016

Fingerprint

Dinoflagellida
Poisons
Genes
Nucleic Acid Databases
Genome
Polyketide Synthases
Bacteria
Shellfish
Quorum Sensing
Bacteriocins
Terpenes
Base Composition
Multigene Family
Transfer RNA
Open Reading Frames
Biosynthesis
Nutrients

ASJC Scopus subject areas

  • Biotechnology
  • Biochemistry
  • Molecular Medicine
  • Genetics

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Draft genome sequence of Mameliella alba strain UMTAT08 isolated from clonal culture of toxic dinoflagellate Alexandrium tamiyavanichii. / Danish-Daniel, Muhd; Han Ming, Gan; Noor, Mohd Ezhar Mohd; Yeong, Yik Sung; Usup, Gires.

In: Genomics Data, Vol. 10, 01.12.2016, p. 12-14.

Research output: Contribution to journalArticle

Danish-Daniel, Muhd ; Han Ming, Gan ; Noor, Mohd Ezhar Mohd ; Yeong, Yik Sung ; Usup, Gires. / Draft genome sequence of Mameliella alba strain UMTAT08 isolated from clonal culture of toxic dinoflagellate Alexandrium tamiyavanichii. In: Genomics Data. 2016 ; Vol. 10. pp. 12-14.
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