Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem

Emmanuel Haruna, Noraziah Mohamad Zin, Jonathan M. Adams

Research output: Contribution to journalArticle

Abstract

Here we report the draft genome sequence of an endophytic Paenibacillus tyrfis strain isolated from the Universiti Kebangsaan Malaysia reserve forest, Malaysia. The genome size was approximately 8.04 Mb, and the assembly consisted of 107 scaffolds with 168 contigs, and had a G + C content of 53%. Phylogenetic analysis of strain SUK123 using the 16S rRNA gene revealed that it belonged to the family Paenibacillaceae with the highest similarity to Paenibacillus elgii SDT (99%). Whole genome comparison of SUK123 with related species using average nucleotide identity (ANI) analysis revealed a similarity of 98% to Paenibacillus tyrfis Mst1T, 94% to Paenibacillus elgii B69T, 91% to Paenibacillus ehimensis A2T, 68% to Paenibacillus polymyxa SC2T and 69% to Paenibacillus alvei DMS29T. The draft genome was deposited at the European Nucleotide Archive (PRJEB21373).

Original languageEnglish
Pages (from-to)44-46
Number of pages3
JournalGenomics Data
Volume14
DOIs
Publication statusPublished - 1 Dec 2017

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Paenibacillus
Bacteria
Genes
Genome
Malaysia
Nucleotides
Genome Size
Scaffolds
Base Composition
rRNA Genes

ASJC Scopus subject areas

  • Biotechnology
  • Biochemistry
  • Molecular Medicine
  • Genetics

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Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem. / Haruna, Emmanuel; Mohamad Zin, Noraziah; Adams, Jonathan M.

In: Genomics Data, Vol. 14, 01.12.2017, p. 44-46.

Research output: Contribution to journalArticle

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