Data on degradome sequencing and analysis from mock-inoculated and Fusarium oxysporum treated leaves samples in Persicaria minor

Abdul Fatah A. Samad, Muhammad Sajad, Jaeyres Jani, Abdul Munir Abd. Murad, Ismanizan Ismail

Research output: Contribution to journalArticle

Abstract

Degradome sequencing referred as parallel analysis of RNA ends (PARE) by modifying 5′-rapid amplification of cDNA ends (RACE) with deep sequencing method. Deep sequencing of 5’ products allow the determination of cleavage sites through the mapping of degradome fragments against small RNAs (miRNA or siRNA) on a large scale. Here, we carried out degradome sequencing in medicinal plant, Persicaria minor, to identify cleavage sites in small RNA libraries in control (mock-inoculated) and Fusarium oxysporum treated plants. The degradome library consisted of both control and treated samples which were pooled together during library preparation and named as D4. The D4 dataset have been deposited at GenBank under accession number SRX3921398, https://www.ncbi.nlm.nih.gov/sra/SRX3921398.

Original languageEnglish
Pages (from-to)555-557
Number of pages3
JournalData in Brief
Volume20
DOIs
Publication statusPublished - 1 Oct 2018

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Fusarium oxysporum
RNA libraries
RNA
rapid amplification of cDNA ends
small interfering RNA
microRNA
medicinal plants
leaves
sampling
high-throughput nucleotide sequencing
Persicaria minor
methodology

ASJC Scopus subject areas

  • General

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Data on degradome sequencing and analysis from mock-inoculated and Fusarium oxysporum treated leaves samples in Persicaria minor. / Samad, Abdul Fatah A.; Sajad, Muhammad; Jani, Jaeyres; Abd. Murad, Abdul Munir; Ismail, Ismanizan.

In: Data in Brief, Vol. 20, 01.10.2018, p. 555-557.

Research output: Contribution to journalArticle

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