Bacterial diversity of oil palm Elaeis guineensis basal stems

Afzufira Amran, Mohd Sanusi Jangi, Wan Syaidatul Aqma Wan Mohd Noor, Nurul Yuziana Mohd Yusof, Mohd Faizal Abu Bakar, Mohd Noor Mat Isa

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Abstract

Oil palm, Elaeis guineensis is one of the major industrial production crops in Malaysia. Basal stem rot, caused by the white fungus, Ganoderma boninense, is a disease that reduces oil palm yields in most production areas of the world. Understanding of bacterial community that is associated with Ganoderma infection will shed light on how this bacterial community contributes toward the severity of the infection. In this preliminary study, we assessed the bacterial community that inhabit the basal stems of E. guineensis based on 16S rRNA gene as a marker using next generation sequencing platform. This result showed that a total of 84,372 operational taxonomic-units (OTUs) were identified within six samples analyzed. A total 55,049 OTUs were assigned to known taxonomy whereas 29,323 were unassigned. Cyanobacteria, Bacteroidetes, Firmicutes and Proteobacteria were the most abundant phyla found in all six samples and the unique taxonomy assigned for each infected and healthy samples were also identified. The findings from this study will further enhance our knowledge in the interaction of bacterial communities against Ganoderma infection within the oil palm host plant and for a better management of the basal stems rot disease.

Original languageEnglish
Title of host publication2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium
PublisherAmerican Institute of Physics Inc.
Volume1784
ISBN (Electronic)9780735414464
DOIs
Publication statusPublished - 17 Nov 2016
Event2016 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2016 - Selangor, Malaysia
Duration: 13 Apr 201614 Apr 2016

Other

Other2016 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2016
CountryMalaysia
CitySelangor
Period13/4/1614/4/16

Fingerprint

stems
infectious diseases
oils
taxonomy
Malaysia
sequencing
fungi
crops
genes
markers
platforms
interactions

ASJC Scopus subject areas

  • Physics and Astronomy(all)

Cite this

Amran, A., Jangi, M. S., Wan Mohd Noor, W. S. A., Mohd Yusof, N. Y., Bakar, M. F. A., & Isa, M. N. M. (2016). Bacterial diversity of oil palm Elaeis guineensis basal stems. In 2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium (Vol. 1784). [020024] American Institute of Physics Inc.. https://doi.org/10.1063/1.4966734

Bacterial diversity of oil palm Elaeis guineensis basal stems. / Amran, Afzufira; Jangi, Mohd Sanusi; Wan Mohd Noor, Wan Syaidatul Aqma; Mohd Yusof, Nurul Yuziana; Bakar, Mohd Faizal Abu; Isa, Mohd Noor Mat.

2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium. Vol. 1784 American Institute of Physics Inc., 2016. 020024.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Amran, A, Jangi, MS, Wan Mohd Noor, WSA, Mohd Yusof, NY, Bakar, MFA & Isa, MNM 2016, Bacterial diversity of oil palm Elaeis guineensis basal stems. in 2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium. vol. 1784, 020024, American Institute of Physics Inc., 2016 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2016, Selangor, Malaysia, 13/4/16. https://doi.org/10.1063/1.4966734
Amran A, Jangi MS, Wan Mohd Noor WSA, Mohd Yusof NY, Bakar MFA, Isa MNM. Bacterial diversity of oil palm Elaeis guineensis basal stems. In 2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium. Vol. 1784. American Institute of Physics Inc. 2016. 020024 https://doi.org/10.1063/1.4966734
Amran, Afzufira ; Jangi, Mohd Sanusi ; Wan Mohd Noor, Wan Syaidatul Aqma ; Mohd Yusof, Nurul Yuziana ; Bakar, Mohd Faizal Abu ; Isa, Mohd Noor Mat. / Bacterial diversity of oil palm Elaeis guineensis basal stems. 2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium. Vol. 1784 American Institute of Physics Inc., 2016.
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