Analysis of miRNAs targeting transcription factors in Persicaria minor induced by Fusarium oxysporum

Abdul Fatah A Samad, Nazaruddin Muhammad Ali, Ismanizan Ismail, Abdul Munir Abd. Murad

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Abstract

A recent discovery showed small non-coding RNA known as microRNA has a crucial role in plant development and plant survival in extreme condition. In the past few years, researchers have managed to identify the various families of transcription factors that play a crucial role in regulating plant development and plant responses to stresses. This study focuses on the expression pattern of miRNA targeted transcription factor under biotic stress in a plant rich with secondary metabolite, Persicaria minor. A pathogenic fungus, Fusarium oxysporum was used in the biotic stress treatment since the previous study revealed this fungus could trigger plant defense system. Two small RNA libraries were constructed which consist of control and treated samples. In order to identify the potential target, psRobot target prediction software was used for each miRNA that shows significant change due to the infection. The result showed miR156b/c, miR172a, miR319, miR858, and miR894 were found to be targeting a wide range of transcription factors that involve in plant development and plant response towards stresses. The expression of miR156b/c and miR172 were up-regulated while the expression of miR319, miR858, and miR894 was found to be down-regulated. These results may provide a certain level of networking between those two regulatory molecules in plant genetic system under biotic stress.

Original languageEnglish
Title of host publication2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium
PublisherAmerican Institute of Physics Inc.
Volume1784
ISBN (Electronic)9780735414464
DOIs
Publication statusPublished - 17 Nov 2016
Event2016 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2016 - Selangor, Malaysia
Duration: 13 Apr 201614 Apr 2016

Other

Other2016 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2016
CountryMalaysia
CitySelangor
Period13/4/1614/4/16

Fingerprint

fungi
metabolites
infectious diseases
actuators
computer programs
predictions
molecules

ASJC Scopus subject areas

  • Physics and Astronomy(all)

Cite this

Samad, A. F. A., Ali, N. M., Ismail, I., & Abd. Murad, A. M. (2016). Analysis of miRNAs targeting transcription factors in Persicaria minor induced by Fusarium oxysporum. In 2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium (Vol. 1784). [020009] American Institute of Physics Inc.. https://doi.org/10.1063/1.4966719

Analysis of miRNAs targeting transcription factors in Persicaria minor induced by Fusarium oxysporum. / Samad, Abdul Fatah A; Ali, Nazaruddin Muhammad; Ismail, Ismanizan; Abd. Murad, Abdul Munir.

2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium. Vol. 1784 American Institute of Physics Inc., 2016. 020009.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Samad, AFA, Ali, NM, Ismail, I & Abd. Murad, AM 2016, Analysis of miRNAs targeting transcription factors in Persicaria minor induced by Fusarium oxysporum. in 2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium. vol. 1784, 020009, American Institute of Physics Inc., 2016 Postgraduate Colloquium of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology, UKM FST 2016, Selangor, Malaysia, 13/4/16. https://doi.org/10.1063/1.4966719
Samad AFA, Ali NM, Ismail I, Abd. Murad AM. Analysis of miRNAs targeting transcription factors in Persicaria minor induced by Fusarium oxysporum. In 2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium. Vol. 1784. American Institute of Physics Inc. 2016. 020009 https://doi.org/10.1063/1.4966719
Samad, Abdul Fatah A ; Ali, Nazaruddin Muhammad ; Ismail, Ismanizan ; Abd. Murad, Abdul Munir. / Analysis of miRNAs targeting transcription factors in Persicaria minor induced by Fusarium oxysporum. 2016 UKM FST Postgraduate Colloquium: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2016 Postgraduate Colloquium. Vol. 1784 American Institute of Physics Inc., 2016.
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